While crowns are done routinely in almost every dental office every day, they still require a very high precision to give a great long-lasting result.
Almost any dental office can have a crown not fit right at the seating appointment. The fact that they sent it back to the lab to have something modified is a good sign. Sometimes it requires a new impression and other modifications do not need one.
At this point there is no reason to believe that any of the long-term fit would be compromised. Feel free to ask your dentist what the issue was and express your concern out loud that you wonder if this episode will affect the results. A good, communicative practice will spell out for you what the issue was and why they sent it back to the lab. They'll also re-establish your confidence when they go to finish this crown.